loosolab / UROPALinks
Universal RObust Peak Annotator
☆16Updated last year
Alternatives and similar repositories for UROPA
Users that are interested in UROPA are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆39Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 8 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- ☆20Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated 4 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- Cellsnake tool main repo☆35Updated last year
- ☆23Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago