Universal RObust Peak Annotator
☆16Dec 19, 2023Updated 2 years ago
Alternatives and similar repositories for UROPA
Users that are interested in UROPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Transcription Factor Co-Occurrence using Market Basket analysis☆17Jul 7, 2025Updated 9 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Oct 2, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated last month
- ☆12Feb 19, 2017Updated 9 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28Jul 28, 2025Updated 9 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆39Jan 19, 2026Updated 3 months ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago
- ☆17Oct 29, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 8 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- ☆10Mar 11, 2025Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆246Mar 23, 2026Updated last month
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 9 months ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Apr 10, 2026Updated 3 weeks ago
- Docker container for Illumina bcl2fastq☆12Aug 7, 2024Updated last year
- UNC-Chapel Hill Bioinformatics Utilities☆24Oct 29, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆25Jan 10, 2024Updated 2 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Apr 15, 2026Updated 3 weeks ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 11 months ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- An automatic classification tool for PVS1 interpretation of null variants☆46Mar 4, 2024Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Feb 26, 2024Updated 2 years ago
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆19Feb 4, 2026Updated 3 months ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- Codes to run deltaSVM models to predict allelic TF binding☆10Apr 5, 2021Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago