nextflow-io / nf-hack17
Nextflow hackathon 2017 projects
☆10Updated 7 years ago
Alternatives and similar repositories for nf-hack17:
Users that are interested in nf-hack17 are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- ☆23Updated 5 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 2 months ago
- Adapters for trimming☆30Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- ☆20Updated 4 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago