DataX-JieHao / PASNetLinks
Pathway-based sparse deep neural network
☆17Updated 4 years ago
Alternatives and similar repositories for PASNet
Users that are interested in PASNet are comparing it to the libraries listed below
Sorting:
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆24Updated 5 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- ☆19Updated 4 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆13Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆156Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆17Updated 5 years ago
- ☆33Updated 2 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 2 months ago
- A deep-learning framework for multi-omics integration☆26Updated 2 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆120Updated 3 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- Cancer Drug Response prediction using a Recommender System☆42Updated 2 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 8 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago