DataX-JieHao / PASNetLinks
Pathway-based sparse deep neural network
☆16Updated 4 years ago
Alternatives and similar repositories for PASNet
Users that are interested in PASNet are comparing it to the libraries listed below
Sorting:
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆24Updated 5 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last month
- Graph Neural Network model for survival analysis from multi-omics data☆13Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 5 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- ☆19Updated 4 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 4 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Updated 4 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- ☆33Updated 2 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆23Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆21Updated 5 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- ☆11Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆12Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- ☆19Updated 4 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- Interpretable splicing model☆20Updated 2 years ago