DataX-JieHao / PASNetLinks
Pathway-based sparse deep neural network
☆16Updated 4 years ago
Alternatives and similar repositories for PASNet
Users that are interested in PASNet are comparing it to the libraries listed below
Sorting:
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 6 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 7 months ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- ☆19Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆23Updated 2 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆19Updated 11 months ago
- Graph Neural Network model for survival analysis from multi-omics data☆13Updated 3 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆54Updated 4 years ago
- ☆29Updated 3 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Knowledge-primed neural networks☆37Updated 2 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆24Updated 5 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 5 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- A deep-learning framework for multi-omics integration☆26Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- ☆10Updated 7 months ago
- Processing the DisGeNET database of disease–gene association☆16Updated 9 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- CpG Transformer for imputation of single-cell methylomes☆38Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 3 years ago
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆12Updated 4 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- covolutional neural network based coexpression analysis☆77Updated 4 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago