mxxdxxx / FirebrowseR
An R client for broads firehose pipeline, providing TCGA data sets
☆60Updated 5 years ago
Alternatives and similar repositories for FirebrowseR:
Users that are interested in FirebrowseR are comparing it to the libraries listed below
- ☆61Updated 4 years ago
- ☆35Updated 8 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- ☆33Updated 6 years ago
- ☆40Updated 7 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 7 months ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- R package containing useful functions for mutational signature analysis☆81Updated this week
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 months ago
- Reactome Pathway Analysis☆42Updated 3 weeks ago
- Explore and download data from the recount3 project☆34Updated 4 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆27Updated 7 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago