mxxdxxx / FirebrowseR
An R client for broads firehose pipeline, providing TCGA data sets
☆60Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for FirebrowseR
- ☆60Updated 4 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- ☆53Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 11 months ago
- ☆33Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- An R interface to enrichR☆77Updated 7 months ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- ☆34Updated 8 years ago
- An R interface to the MEME Suite☆46Updated last month
- ☆40Updated 6 years ago
- ☆53Updated 3 years ago
- Identify and correct invalid gene symbols☆55Updated this week
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 4 months ago
- Code for biostar tutorials - mostly R and Perl☆50Updated 3 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- scRNA-seq cell type identification☆41Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- Toolbox with R scripts☆37Updated 6 years ago
- ☆12Updated 6 years ago