mxxdxxx / FirebrowseRLinks
An R client for broads firehose pipeline, providing TCGA data sets
☆61Updated 6 years ago
Alternatives and similar repositories for FirebrowseR
Users that are interested in FirebrowseR are comparing it to the libraries listed below
Sorting:
- ☆62Updated 5 years ago
- ☆33Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- ☆41Updated 7 years ago
- Normalization for single cell RNA-seq data☆49Updated 6 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- ☆35Updated 9 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- GLASS consortium☆42Updated 5 years ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- ☆55Updated 9 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆86Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆31Updated 9 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago