mxxdxxx / FirebrowseRLinks
An R client for broads firehose pipeline, providing TCGA data sets
☆61Updated 6 years ago
Alternatives and similar repositories for FirebrowseR
Users that are interested in FirebrowseR are comparing it to the libraries listed below
Sorting:
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆46Updated 10 months ago
- ☆62Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- ☆33Updated 7 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- R package containing useful functions for mutational signature analysis☆87Updated this week
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- R package for genomic feature analysis and visualization☆79Updated 9 months ago
- ☆55Updated 11 months ago
- ☆41Updated 7 years ago
- Normalization for single cell RNA-seq data☆50Updated 7 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆33Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 5 months ago
- Identify and correct invalid gene symbols☆62Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 3 years ago
- Transcript quantification import for modular pipelines☆143Updated 4 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago