This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"
☆29Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for UncertaintyRNA
Users that are interested in UncertaintyRNA are comparing it to the libraries listed below
Sorting:
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Oct 1, 2024Updated last year
- Readme☆10Mar 15, 2020Updated 5 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 3 years ago
- Interactive box plot for clinical trial analysis☆13Jan 9, 2026Updated last month
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- ☆19Jul 3, 2022Updated 3 years ago
- Website for the precision medicine workshop☆46Feb 20, 2026Updated 2 weeks ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Jul 13, 2023Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- ☆145May 14, 2018Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- lncRNA-screen☆25Apr 19, 2017Updated 8 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- ☆61Mar 23, 2021Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- ☆26Feb 24, 2026Updated last week
- ☆16Aug 17, 2023Updated 2 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 4 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Bax File Decoder and Data Compressor☆34Jan 3, 2024Updated 2 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Feb 24, 2026Updated last week
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- ☆36Sep 6, 2017Updated 8 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Sep 10, 2023Updated 2 years ago
- An R package for using dplyr on matched tree and data objects☆33Feb 19, 2025Updated last year
- ☆32Dec 29, 2023Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Apr 30, 2024Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Bayesian No-Effect-Concentration estimation in R☆14Dec 19, 2025Updated 2 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- ☆36Apr 16, 2025Updated 10 months ago
- A CUDA Library for Parallel n-body Integrations with focus on Simulations☆17Jul 2, 2014Updated 11 years ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago