waldronlab / PublicDataResources
Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources including the Gene Expression Omnibus GEO, Sequence Read Archive SRA, the Genomic Data Commons GDC, and Bioconductor-hosted curated data resources for metagenomics, pharmacoge…
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for PublicDataResources
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- ATACseqQC tutorials for BioC 2019 workshop☆15Updated 4 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Toolbox package for organizing and working with TCGA data☆23Updated last week
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated 10 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- GEO RNA-seq Experiments Processing Pipeline☆20Updated 5 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- ☆11Updated 4 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Updated this week
- Machine learning use cases for teaching☆13Updated 7 years ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- Gene-level general linear mixed model☆18Updated last month
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆27Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆17Updated 4 years ago
- ☆9Updated 4 years ago
- Course Materials for Genomics Data Mining☆22Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last week
- R package for plotting 3D graphical visualization of multi-omics data.☆21Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week