waldronlab / PublicDataResources
Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources including the Gene Expression Omnibus GEO, Sequence Read Archive SRA, the Genomic Data Commons GDC, and Bioconductor-hosted curated data resources for metagenomics, pharmacoge…
☆14Updated last month
Alternatives and similar repositories for PublicDataResources:
Users that are interested in PublicDataResources are comparing it to the libraries listed below
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Workshop for CNV analysis with Bioconductor☆17Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated last month
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- ☆11Updated 4 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆15Updated 4 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated last week
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 2 months ago
- Statistical power studies for multi-omics experiments.☆30Updated last month
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 2 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated 2 weeks ago