waldronlab / PublicDataResourcesLinks
Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources including the Gene Expression Omnibus GEO, Sequence Read Archive SRA, the Genomic Data Commons GDC, and Bioconductor-hosted curated data resources for metagenomics, pharmacoge…
☆15Updated 5 months ago
Alternatives and similar repositories for PublicDataResources
Users that are interested in PublicDataResources are comparing it to the libraries listed below
Sorting:
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 6 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 9 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated 2 weeks ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated this week
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Gene-level general linear mixed model☆23Updated 3 weeks ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Statistical power studies for multi-omics experiments.☆32Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- DEAPP shiny App☆30Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- ☆20Updated 3 months ago