ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPPLinks
The Cancer bioMarker Prediction Pipeline (CAMPP)
☆17Updated 4 years ago
Alternatives and similar repositories for CAncer-bioMarker-Prediction-Pipeline-CAMPP
Users that are interested in CAncer-bioMarker-Prediction-Pipeline-CAMPP are comparing it to the libraries listed below
Sorting:
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- ☆24Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated last month
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated this week
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last month
- ESTIMATE tumor infiltration, the tidy way☆15Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated last month
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 4 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 weeks ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 6 months ago
- ☆16Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last week
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Core utilities for single-cell RNA-seq☆12Updated last month
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Machine learning use cases for teaching☆13Updated 7 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- MeSH Enrichment and Semantic analyses☆12Updated last month
- Gene-level meta-analysis of high-throughput functional genomics (RNAi or CRISPR) screens.☆9Updated 8 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 6 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated last month