ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
The Cancer bioMarker Prediction Pipeline (CAMPP)
☆17Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for CAncer-bioMarker-Prediction-Pipeline-CAMPP
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 4 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated last week
- Multi-omics data normalisation, model fitting and visualisation.☆24Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆24Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆30Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last year
- Core utilities for single-cell RNA-seq☆12Updated 8 months ago
- Gene-level meta-analysis of high-throughput functional genomics (RNAi or CRISPR) screens.☆9Updated 8 years ago
- ☆15Updated 4 years ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆17Updated 7 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆19Updated 3 weeks ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last week
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆20Updated 5 years ago
- ☆23Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆10Updated last week
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated this week
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- ☆17Updated 5 months ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 3 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 2 months ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- Gene-level general linear mixed model☆18Updated last month
- GWAS gold standards repository☆29Updated 11 months ago