Alternatives and similar repositories for labnotes:

Users that are interested in labnotes are comparing it to the libraries listed below

• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 2 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 3 months ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated this week
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 5 years ago
• ihh / gfftools
  Perl scripts for working with the GFF format
  ☆16Updated 13 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 years ago
• nanoporetech / dRNA-paper-scripts
  Direct RNA publication scripts
  ☆11Updated 7 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆12Updated 9 months ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 9 months ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 7 months ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 9 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆12Updated 8 years ago
• sirselim / diagnostics_exome_reporting
  Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
  ☆14Updated 5 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated last year
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 6 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• KiddLab / QuicK-mer2
  ☆11Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 2 years ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆24Updated last month
• ryhui / imputation-pipeline
  ☆10Updated 4 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆40Updated 6 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week