A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
☆25Aug 9, 2023Updated 3 years ago
Alternatives and similar repositories for Guide-to-manipulating-PLINK-EIG-and-VCF-files
Users that are interested in Guide-to-manipulating-PLINK-EIG-and-VCF-files are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆48Jul 27, 2023Updated 3 years ago
- ☆17May 30, 2024Updated 2 years ago
- ☆52May 12, 2026Updated 5 months ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 7 months ago
- ☆13Oct 19, 2023Updated 3 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆16Aug 6, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- ☆37Nov 30, 2023Updated 2 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Drawing functions for Demes demographic models☆24Jul 20, 2026Updated 3 months ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15Aug 14, 2026Updated 2 months ago
- 3’ Tag RNA-seq pipeline (Work in progress)☆11Mar 14, 2021Updated 5 years ago
- R interface to genome annotation files and the UCSC genome browser☆37Oct 9, 2026Updated 2 weeks ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated 2 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Aug 14, 2026Updated 2 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ggplot2-based Manhattan plot☆13Oct 18, 2022Updated 4 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 20, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆56Dec 15, 2025Updated 10 months ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- ☆12Mar 8, 2026Updated 7 months ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- Time-stratified f-statistics☆19Aug 1, 2025Updated last year
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago
- ☆105Jun 28, 2026Updated 4 months ago
- ☆24Jun 9, 2021Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆67May 3, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated last week
- Scripts for gathering SLURM statistics☆23Oct 6, 2018Updated 8 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- Construction of small-world, scale-free networks☆16Mar 16, 2017Updated 9 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 7 years ago