ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
☆18Updated last year
Alternatives and similar repositories for Guide-to-manipulating-PLINK-EIG-and-VCF-files:
Users that are interested in Guide-to-manipulating-PLINK-EIG-and-VCF-files are comparing it to the libraries listed below
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated last month
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Scripts to convert between file formats for various analyses☆14Updated 5 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated 3 months ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- ☆24Updated 7 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Course in population genomics at BiRC☆12Updated 7 months ago
- ☆16Updated 2 years ago
- Structural variant merging tool☆49Updated 4 months ago
- Variant annotation and merging pipeline☆31Updated last week
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 5 years ago
- Repository for pipeline code☆24Updated 10 months ago
- ☆27Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Transposable element polymorphism identification☆32Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆28Updated last year
- ☆22Updated 9 months ago
- The cattle Genotype-Tissue Expression atlas v1☆23Updated last year