ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-filesLinks
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
☆21Updated last year
Alternatives and similar repositories for Guide-to-manipulating-PLINK-EIG-and-VCF-files
Users that are interested in Guide-to-manipulating-PLINK-EIG-and-VCF-files are comparing it to the libraries listed below
Sorting:
- ☆24Updated 8 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- ☆23Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Scripts to convert between file formats for various analyses☆16Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆34Updated last year
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆26Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Transposable element polymorphism identification☆33Updated 4 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆24Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 4 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last week
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆14Updated 3 weeks ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆30Updated 10 months ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- ☆29Updated last year