Alternatives and similar repositories for AuthentiCT:

Users that are interested in AuthentiCT are comparing it to the libraries listed below

• hringbauer / hapROH
  Software to call ROHs
  ☆16Updated 3 months ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆17Updated this week
• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆20Updated 4 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• regevs / gamma_smc
  ☆18Updated last year
• ANGSD / NgsRelate
  ☆43Updated last year
• grenaud / gargammel
  gargammel is an ancient DNA simulator
  ☆27Updated 7 months ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆26Updated 3 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆29Updated last week
• Rosemeis / emu
  EM-PCA for Ultra-low Coverage Sequencing Data
  ☆16Updated last month
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 3 years ago
• hemstrow / snpR
  ☆29Updated this week
• MaikeMorrison / FSTruct
  ☆13Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆16Updated 4 years ago
• grenaud / vgan
  Suite of tools for pangenomics built using vg
  ☆21Updated last month
• cran / PopGenome
   This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …
  ☆16Updated 5 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• marcomilanesi / BITE
  BITE: BioInformatics tools for everyone
  ☆19Updated 7 months ago
• ruidlpm / pathPhynder
  A workflow for integrating ancient lineages into present-day phylogenies.
  ☆24Updated 5 months ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated last week
• NovembreLab / feems
  ☆17Updated last year
• grenaud / schmutzi
  Maximum a posteriori estimate of contamination for ancient samples
  ☆20Updated 4 months ago
• tyjo / dystruct
  Inference of population structure from time-series genotype data
  ☆13Updated 5 years ago
• GGFHF / ddRADseqTools
  Software package for in silico simulation and testing of double digest RADseq experiments.
  ☆19Updated 4 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆37Updated last week
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆22Updated 4 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago