mvinyard / torch-adata
Create PyTorch Datasets from AnnData
☆20Updated 2 weeks ago
Alternatives and similar repositories for torch-adata:
Users that are interested in torch-adata are comparing it to the libraries listed below
- ☆21Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- ☆25Updated 5 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 4 months ago
- Test genes for Spatial Variation☆14Updated 3 months ago
- CAST package☆32Updated 4 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Identification of spatial homogeneous regions☆20Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 3 weeks ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 11 months ago
- ☆42Updated 4 months ago
- .h5mu files interface for Seurat☆28Updated last year
- ☆45Updated 2 years ago
- ☆25Updated 5 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 3 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated 6 months ago