Alternatives and similar repositories for torch-adata

Users that are interested in torch-adata are comparing it to the libraries listed below

• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 9 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated last week
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 6 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 8 months ago
• almaan / eggplant
  ☆22Updated 2 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆26Updated last week
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 7 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆34Updated 2 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 5 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆38Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 7 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆15Updated 11 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 5 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated this week
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆52Updated 3 weeks ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 3 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆20Updated 2 weeks ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated 2 months ago
• theislab / scTab
  ☆59Updated 9 months ago
• theislab / geome
  ☆16Updated 11 months ago
• cellatlas / human
  ☆43Updated 7 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago