mvinyard / torch-adata
Create PyTorch Datasets from AnnData
☆20Updated last month
Related projects ⓘ
Alternatives and complementary repositories for torch-adata
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- ☆20Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆25Updated this week
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- ☆25Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆25Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated 2 months ago
- ☆22Updated last month
- Using BCR and expression for sequence embedding☆19Updated 3 weeks ago
- Documentation for the cellxgene product☆16Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆24Updated 2 weeks ago
- ☆23Updated last month
- Methods for visualization and analysis of spatially-resolved gene expression☆13Updated last week
- Test genes for Spatial Variation☆12Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆25Updated 3 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆33Updated last year
- Slides and Notebooks for scverse 2024☆17Updated last month
- A python package for chromVAR☆27Updated last year
- ☆26Updated 10 months ago
- Template repository for creating novel models with scvi-tools☆19Updated last year
- AnnData interoperability in R☆58Updated last week
- ☆16Updated 4 months ago
- RNA velocity validation☆23Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Spatial reconstruction of dissociated single-cell data☆17Updated 10 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆19Updated this week