Create PyTorch Datasets from AnnData
☆21Jan 6, 2026Updated 9 months ago
Alternatives and similar repositories for torch-adata
Users that are interested in torch-adata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- ☆26Aug 15, 2023Updated 3 years ago
- ☆17Sep 27, 2026Updated last month
- Analysis of epigenetic data in Python☆15Updated this week
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 6 years ago
- Simple scVI implementation☆13Oct 19, 2026Updated last week
- Analysis of the effect of sequence padding on the performance of a hierarchical EC number prediction task.☆11Jan 23, 2026Updated 9 months ago
- The framework of VL-Granger causality inference☆10Oct 7, 2019Updated 7 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Deep convolutional neural networks for biological motion analysis☆15Jan 26, 2019Updated 7 years ago
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Oct 20, 2026Updated last week
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- ☆15Apr 17, 2025Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41May 6, 2022Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆65Feb 1, 2021Updated 5 years ago
- Distributed single-cell data analysis.☆40Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Oct 26, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆33Jun 24, 2024Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Cookiecutter template for scverse☆91Updated this week
- Tutorial for using the perturbseq library to load and manipulate experiments☆26Aug 7, 2019Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆22Jun 12, 2023Updated 3 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments☆12Updated this week
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆38Nov 29, 2024Updated last year
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- Single cell analysis in Javascript☆23Nov 28, 2025Updated 11 months ago