Alternatives and similar repositories for torch-adata

Users that are interested in torch-adata are comparing it to the libraries listed below

• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated 2 weeks ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated last month
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 3 weeks ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 8 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 11 months ago
• almaan / eggplant
  ☆22Updated 2 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆58Updated last month
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated 3 weeks ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆47Updated 9 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 6 months ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆25Updated this week
• lilab-bcb / harmony-pytorch
  ☆55Updated 2 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆43Updated last week
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆26Updated 7 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆35Updated last year
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 2 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 2 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆53Updated 11 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆30Updated 7 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆33Updated 9 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 10 months ago