mvinyard / torch-adataLinks
Create PyTorch Datasets from AnnData
☆21Updated 5 months ago
Alternatives and similar repositories for torch-adata
Users that are interested in torch-adata are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- ☆59Updated 11 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- a dataloader to work with large single cell datasets from lamindb☆29Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 7 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago
- Python client for the OmniPath web service☆45Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Using BCR and expression for sequence embedding☆25Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 10 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last month
- Multi-omics factor analysis v2☆48Updated 10 months ago
- ☆55Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- spatial transcriptome, single cell☆69Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- Information-based dimensionality reduction☆29Updated 8 months ago