Alternatives and similar repositories for torch-adata:

Users that are interested in torch-adata are comparing it to the libraries listed below

• almaan / eggplant
  ☆21Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 6 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 4 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago
• wanglab-broad / CAST
  CAST package
  ☆32Updated 4 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 3 months ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆21Updated this week
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated this week
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆51Updated 2 weeks ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated 3 weeks ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆23Updated 2 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated 11 months ago
• cellatlas / human
  ☆42Updated 4 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 3 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated this week
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated last month
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated 6 months ago