statOmics / satuRn
satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
☆21Updated 2 years ago
Alternatives and similar repositories for satuRn:
Users that are interested in satuRn are comparing it to the libraries listed below
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- SCASA: Single cell transcript quantification tool☆20Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- GLASS consortium☆13Updated 2 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 4 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆20Updated 9 months ago
- ☆27Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 9 months ago
- ☆29Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Pan-transcriptomic phenotyping☆16Updated 3 weeks ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆22Updated last week
- R package wrapping bedtools☆39Updated 2 weeks ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago