satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
☆23Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for satuRn
Users that are interested in satuRn are comparing it to the libraries listed below
Sorting:
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Feb 5, 2026Updated 3 weeks ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Mar 30, 2024Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆228Updated this week
- Visualizing transcript structure and annotation using ggplot2☆165Aug 24, 2024Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Mar 9, 2023Updated 2 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆21Feb 2, 2026Updated last month
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Jan 29, 2026Updated last month
- Bullseye analysis pipeline for DART-seq analysis☆15Updated this week
- scripts and material for my contributions to the 30DayMapChallenge☆12Feb 25, 2022Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- ☆54Aug 1, 2024Updated last year
- ☆34Nov 14, 2025Updated 3 months ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 3 weeks ago
- Differential expression and allelic analysis, nonparametric statistics☆30Jan 3, 2025Updated last year
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated last month
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- A tool to facilitate comparative visualisation of CLIP data☆16Nov 29, 2023Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- exRNA Biomarker Discovery for Liquid Biopsy☆13Oct 29, 2020Updated 5 years ago
- Pan-transcriptomic phenotyping☆18Updated this week
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- ☆20Jan 16, 2026Updated last month
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Dec 30, 2025Updated 2 months ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Interactive benchmarking of ranking and assignment methods☆16Dec 13, 2025Updated 2 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 4 months ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago