statOmics / satuRn
satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
☆21Updated 2 years ago
Alternatives and similar repositories for satuRn:
Users that are interested in satuRn are comparing it to the libraries listed below
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Single-cell RNA Processing Software☆11Updated 4 months ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Visualise correlation results and test significancies of these☆22Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆12Updated this week
- R package wrapping bedtools☆38Updated last week
- ☆20Updated 8 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- ☆27Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆19Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 5 months ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆12Updated 9 months ago
- An R package to interpret biological trends from DNA methylation data☆16Updated 2 years ago