satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
☆23Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for satuRn
Users that are interested in satuRn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Mar 12, 2026Updated last week
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆230Updated this week
- Differential expression and allelic analysis, nonparametric statistics☆30Jan 3, 2025Updated last year
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 3 weeks ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆21Feb 2, 2026Updated last month
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Mar 9, 2023Updated 3 years ago
- Visualizing transcript structure and annotation using ggplot2☆166Aug 24, 2024Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated this week
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆27Jan 29, 2026Updated last month
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆22Mar 30, 2024Updated last year
- ☆35Mar 17, 2026Updated last week
- ☆55Aug 1, 2024Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 5 months ago
- A tool to facilitate comparative visualisation of CLIP data☆16Nov 29, 2023Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- Pan-transcriptomic phenotyping☆18Mar 8, 2026Updated 2 weeks ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆22Nov 16, 2020Updated 5 years ago
- scripts and material for my contributions to the 30DayMapChallenge☆12Feb 25, 2022Updated 4 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Aug 5, 2020Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Bullseye analysis pipeline for DART-seq analysis☆15Feb 28, 2026Updated 3 weeks ago
- Just the leafviz parts of Leafcutter☆15Mar 13, 2026Updated last week
- Interactive benchmarking of ranking and assignment methods☆16Dec 13, 2025Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆177Apr 12, 2023Updated 2 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago