satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
☆25Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for satuRn
Users that are interested in satuRn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- distinct: a method for differential analyses via hierarchical permutation tests☆13Updated this week
- DTU analysis tool inspired by llamas☆12May 22, 2026Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆134Apr 10, 2026Updated 3 months ago
- Benchmarking long-read RNA-seq analysis tools☆28Feb 17, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 2 months ago
- Differential expression and allelic analysis, nonparametric statistics☆32Jan 3, 2025Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 4 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆45Mar 9, 2023Updated 3 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Visualizing transcript structure and annotation using ggplot2☆169Aug 24, 2024Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆41Jun 8, 2026Updated last month
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- ☆55Aug 1, 2024Updated last year
- Pan-transcriptomic phenotyping☆19May 12, 2026Updated 2 months ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 9 months ago
- A tool to facilitate comparative visualisation of CLIP data☆18Nov 29, 2023Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- ☆37Jun 26, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 5 months ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jun 8, 2026Updated last month
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- scripts and material for my contributions to the 30DayMapChallenge☆12Feb 25, 2022Updated 4 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Simple R client to UCSC Xena data hubs☆10Jun 1, 2015Updated 11 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆185Apr 12, 2023Updated 3 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Interactive benchmarking of ranking and assignment methods☆16May 14, 2026Updated 2 months ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago