Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
☆23May 16, 2026Updated this week
Alternatives and similar repositories for SPRING
Users that are interested in SPRING are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pulsar: Parallel Utilities for Lambda Selection along a Regularization Path☆10Mar 28, 2026Updated last month
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 5 months ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).☆16Nov 18, 2025Updated 6 months ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- R package for sparse canonical correlation analysis with mixed data types (continuous, binary, zero-truncated)☆22Nov 17, 2025Updated 6 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 9 months ago
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 6 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 months ago
- An implementation of LassoNet for arbitrary network architectures☆14Nov 4, 2022Updated 3 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 7 months ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 16S pipeline using qiime2 created with snakemake☆12May 14, 2026Updated last week
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated last month
- Bayesian modelling of bipartite networks☆13Jan 22, 2025Updated last year
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆247May 12, 2026Updated last week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆12Jan 23, 2026Updated 3 months ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last week
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 months ago