bioinfo workflow based on snakemake
☆15Feb 22, 2024Updated 2 years ago
Alternatives and similar repositories for snakeflow
Users that are interested in snakeflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Mar 11, 2025Updated last year
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- [G]enomic [P]ositioning with [Py]thon☆15Jun 19, 2026Updated last month
- ☆20Mar 31, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 6 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 8 months ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 7 months ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- BLAST-Like Alignment Tool☆23Jan 11, 2019Updated 7 years ago
- Legend made easy for matplotlib☆36Jun 13, 2026Updated last month
- Fast-ish (and correct!) quantile normalization in Python.☆31Jun 5, 2025Updated last year
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Apr 24, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ☆27Dec 3, 2025Updated 7 months ago
- Blazing fast toolkit to work with .hic and .cool files☆45Updated this week
- RNA Structural Covariation Above Phylogenetic Expectation☆24Updated this week
- Genomic related tools☆76Nov 13, 2021Updated 4 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆31Apr 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 7 months ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆19Oct 26, 2024Updated last year
- ☆23May 28, 2026Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- ☆12Mar 19, 2026Updated 4 months ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 10 months ago
- ☆13Nov 18, 2024Updated last year
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago