zqfang / snakeflow

Related projects ⓘ

Alternatives and complementary repositories for snakeflow

• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆18Updated 4 months ago
• flemingtonlab / SpliceTools
  ☆18Updated 4 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆17Updated 2 years ago
• icbi-lab / downloader
  Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
  ☆8Updated 3 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆12Updated 5 years ago
• RacconC / gtftools
  ☆13Updated last year
• Xinglab / rMATS-long
  ☆23Updated 3 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 11 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆17Updated 5 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆15Updated 2 weeks ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆20Updated last year
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆16Updated 3 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• songlab-cal / scquint
  ☆15Updated 5 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆17Updated 7 months ago
• jkimlab / msPIPE
  ☆17Updated last year
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆15Updated last month
• zhongzhd / ont_m6a_detection
  ☆10Updated 2 months ago
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆15Updated 6 months ago
• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆16Updated 2 months ago
• rli012 / BioinfoHub
  ☆12Updated 2 years ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆22Updated 2 years ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆19Updated last year
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated 7 months ago
• XiDsLab / TAGET
  ☆15Updated 2 years ago
• xia-lab / Seq2Fun
  ☆16Updated 7 months ago