lucian-ilie / SPRINT
SPRINT: Scoring PRotein INTeractions
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SPRINT
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆19Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- ☆45Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆50Updated this week
- ☆13Updated 7 years ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆77Updated 7 months ago
- ☆20Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆32Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆90Updated 6 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- A domain parser for Alphafold models☆32Updated 10 months ago
- Code for the antibody deep learning paper.☆14Updated 2 years ago
- PyDock Tutorial☆30Updated 6 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆37Updated 3 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆53Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆22Updated last year
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- ☆15Updated last year
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆20Updated 2 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆16Updated 2 months ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆26Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- Python package to manage protein structures and their annotations☆40Updated 8 months ago
- An antibody-specific language model focusing on NGL prediction☆20Updated 2 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆36Updated last month
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆15Updated 3 years ago
- Set of useful HADDOCK utility scripts☆47Updated 2 months ago
- Tools for annotation, processing and ML for antibody sequences☆18Updated this week
- ☆18Updated 5 months ago