A nextflow pipeline to perform state-of-the-art genome-wide association studies.
☆82Oct 7, 2025Updated 7 months ago
Alternatives and similar repositories for nf-gwas
Users that are interested in nf-gwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jun 26, 2025Updated 10 months ago
- Scripts for GWAS association and metaanalysis☆43Dec 8, 2020Updated 5 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆262Nov 13, 2025Updated 5 months ago
- Tutorials for statistical genetics short courses☆40Jan 7, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Simple test framework for Nextflow pipelines☆185Apr 27, 2026Updated last week
- Encore Analysis Server☆13Apr 30, 2026Updated last week
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Framework for efficient high-dimensional association analyses.☆19Feb 11, 2026Updated 2 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Mar 24, 2026Updated last month
- tools to efficiently retrieve and calculate LD☆33Sep 3, 2021Updated 4 years ago
- user-friendly pipeline for GWAS fine-mapping☆14Mar 9, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆40Feb 8, 2026Updated 3 months ago
- Applying polygenic scores (PGS) on imputed genotypes☆35Oct 28, 2025Updated 6 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tools to work with GWAS-VCF summary statistics files☆136Feb 2, 2026Updated 3 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 8 months ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 8 months ago
- Cross-population fine-mapping☆44Dec 7, 2024Updated last year
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 7 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- ☆21Nov 15, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A bioinformatics pipeline to phase and impute genetic data☆30Apr 30, 2026Updated last week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated last month
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆85Sep 28, 2024Updated last year
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 8 months ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆24Aug 9, 2023Updated 2 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆165Dec 11, 2025Updated 4 months ago