A nextflow pipeline to perform state-of-the-art genome-wide association studies.
☆84Oct 7, 2025Updated last year
Alternatives and similar repositories for nf-gwas
Users that are interested in nf-gwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Ultrafast and powerful eGene identification method☆10Jul 17, 2025Updated last year
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- Simple test framework for Nextflow pipelines☆193Apr 27, 2026Updated 5 months ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jul 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for GWAS association and metaanalysis☆43Dec 8, 2020Updated 5 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆271Oct 2, 2026Updated 3 weeks ago
- ☆14Feb 13, 2023Updated 3 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆41Feb 8, 2026Updated 8 months ago
- Tutorials for statistical genetics short courses☆44Sep 22, 2026Updated last month
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Encore Analysis Server☆13Oct 1, 2026Updated 3 weeks ago
- Tools to work with GWAS-VCF summary statistics files☆143Sep 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- kir-mapper is a toolkit for calling SNPs, alleles, and haplotypes for KIR genes from short-read second-generation sequencing (NGS) data.☆12Aug 13, 2026Updated 2 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆28Jun 7, 2026Updated 4 months ago
- Large scale ancestry inference from PCA data☆26May 2, 2023Updated 3 years ago
- A bioinformatics pipeline to phase and impute genetic data☆36Oct 7, 2026Updated 2 weeks ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Repository☆10Oct 23, 2024Updated 2 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆87Sep 28, 2024Updated 2 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆14Feb 14, 2024Updated 2 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 4 years ago
- user-friendly pipeline for GWAS fine-mapping☆14Mar 9, 2025Updated last year
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- tools to efficiently retrieve and calculate LD☆35Sep 3, 2021Updated 5 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆64Sep 26, 2026Updated 3 weeks ago
- Codebook from my GWAS cookbook☆197May 26, 2022Updated 4 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆36Oct 28, 2025Updated 11 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆90May 13, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 4 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆19Jun 9, 2026Updated 4 months ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 5 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"☆13Sep 15, 2022Updated 4 years ago