MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
☆27Jul 13, 2018Updated 7 years ago
Alternatives and similar repositories for UltraQuant
Users that are interested in UltraQuant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A guide to running MaxQuant in Linux☆35Feb 10, 2020Updated 6 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Updated this week
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Feb 19, 2026Updated last month
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data☆14May 9, 2025Updated 11 months ago
- MaxQuant Automated Pipeline☆24Jun 13, 2020Updated 5 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Mar 31, 2026Updated last week
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- ☆12Jan 14, 2023Updated 3 years ago
- Kinase Activity Predictions from shotgun proteomics☆13Apr 18, 2017Updated 8 years ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 4 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Feb 12, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Platform independent command line tool for analysis of mass spectrometry data.☆15Dec 26, 2022Updated 3 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Mar 25, 2026Updated 2 weeks ago
- ☆11Sep 1, 2023Updated 2 years ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Jan 7, 2026Updated 3 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Mar 31, 2026Updated last week
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆46Apr 1, 2025Updated last year
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- A library for QC report based on MultiQC framework☆29Mar 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- ☆10Jul 29, 2020Updated 5 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 6 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆13May 8, 2023Updated 2 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- Encore Analysis Server☆13Nov 18, 2025Updated 4 months ago
- ☆15Jan 27, 2022Updated 4 years ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆23Jan 19, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆36Mar 23, 2026Updated 2 weeks ago
- A label free quantification tool.☆19Jan 13, 2026Updated 2 months ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆100Mar 18, 2026Updated 3 weeks ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆12Jul 16, 2024Updated last year
- Final repository for the project "Unsupervised Machine Learning for the Classification of Astrophysical X-ray Sources". V. S. Pérez-Díaz,…☆10Jan 23, 2024Updated 2 years ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year