kentsislab / UltraQuantLinks
MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
☆27Updated 7 years ago
Alternatives and similar repositories for UltraQuant
Users that are interested in UltraQuant are comparing it to the libraries listed below
Sorting:
- ☆66Updated last year
- Absolute quantification package based on quantms.io☆16Updated 2 months ago
- ☆55Updated 4 years ago
- pathway and network analysis for metabolomics☆43Updated last week
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- A Python interface to proteomics data repositories☆36Updated 5 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆41Updated 2 weeks ago
- DRUGZ software☆24Updated 4 years ago
- ☆38Updated 2 years ago
- A library for QC report based on MultiQC framework☆22Updated last week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- ☆24Updated 2 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- A label free quantification tool.☆18Updated 5 months ago
- Python client for PRIDE Archive Rest API.☆26Updated last month
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆49Updated 2 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- Integration ribosome profiling - mass spectrometry☆15Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- ☆28Updated 10 months ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated 3 weeks ago
- Multi-Omics Peptide Generator☆29Updated last month
- PRedictor of IMmunogenic Epitopes☆25Updated 2 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated 4 months ago
- R package for optimized LC-MS spectra processing☆26Updated this week
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 7 months ago