Alternatives and similar repositories for airr-standards

Users that are interested in airr-standards are comparing it to the libraries listed below

• seshadrilab / tcrconvert
  Convert TCR gene names
  ☆15Updated last month
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 4 years ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated 2 weeks ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆62Updated this week
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 7 months ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 8 months ago
• IEDB / TCRMatch
  ☆31Updated 7 months ago
• steven-shuken / permFDP
  An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…
  ☆12Updated 2 years ago
• fraenkel-lab / OmicsIntegrator
  This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…
  ☆31Updated 7 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆24Updated last year
• joachimwolff / algorithmsInBioinformatics
  Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python
  ☆18Updated 9 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 2 months ago
• slowkow / allelefrequencies
  📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
  ☆23Updated last year
• jpquast / protti
  Picotti lab data analysis package.
  ☆66Updated this week
• BiocPy / rds2py
  Read RDS files, in Python
  ☆25Updated last week
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆37Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• imkeller / gscreend
  Phenotype detection in pooled genetic perturbation screens
  ☆11Updated last year
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆24Updated 2 years ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆63Updated 2 months ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆23Updated this week
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 4 years ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆42Updated last week
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆66Updated 3 weeks ago
• SamGG / ropls
  ☆12Updated 7 years ago
• StoreyLab / superSeq
  Assessing the increase in power from increasing read depth in a given RNA-Seq study
  ☆13Updated 6 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last week