Alternatives and similar repositories for Generative_AAV_design:

Users that are interested in Generative_AAV_design are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• piercelab / tcrmodel2
  ☆37Updated 4 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆44Updated 5 years ago
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆40Updated 3 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆86Updated last year
• BrooksResearchGroup-UM / PEVAE_Paper
  Deciphering protein evolution and fitness landscapes with latent space models
  ☆32Updated 3 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• HaochenW / Deep_promoter
  The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
  ☆26Updated 5 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 3 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆71Updated 10 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆44Updated this week
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• ntranoslab / esm-variants
  ☆72Updated last year
• brineylab / antiref
  AntiRef: reference clusters of human antibody sequences
  ☆12Updated 10 months ago
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆20Updated 4 months ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 3 months ago
• epicrispr-biotechnologies / evolutionary_monte_carlo_search
  Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences
  ☆11Updated 11 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆50Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆34Updated 5 months ago
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆44Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• tymor22 / tm-vec
  ☆65Updated 5 months ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 2 years ago