Code and Data for Generative modeling for AAV design
☆10Nov 13, 2023Updated 2 years ago
Alternatives and similar repositories for Generative_AAV_design
Users that are interested in Generative_AAV_design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆18Mar 9, 2021Updated 5 years ago
- Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"☆26Dec 15, 2019Updated 6 years ago
- Bioinformatics code for paper associated with deep diversification of AAV☆41Nov 27, 2024Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 4 months ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- Jupyter notebooks from our weekly (or so) hackathons☆11Dec 3, 2024Updated last year
- random colab notebooks for biology☆26Aug 23, 2025Updated 11 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated last month
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Jul 28, 2026Updated 2 weeks ago
- An interactive browser for the VDJdb database☆16Updated this week
- ☆16Dec 8, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 用于举办 Puzzle Hunt 的网站，主要为 P&KU 这一活动开发。☆20Jun 30, 2026Updated last month
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆21Apr 2, 2026Updated 4 months ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆75Oct 14, 2023Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 8 years ago
- pygor3 repository☆10Nov 20, 2025Updated 8 months ago
- Polyreactivity Website☆23Jun 26, 2023Updated 3 years ago
- ☆17Mar 26, 2024Updated 2 years ago
- Fast string distance computation in Python☆16Dec 21, 2022Updated 3 years ago
- Course: Databases☆12May 5, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆19Jun 9, 2022Updated 4 years ago
- Clone from http://people.sc.fsu.edu/~jburkardt/cpp_src/cpp_src.html☆29Feb 3, 2018Updated 8 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- ☆21Dec 21, 2022Updated 3 years ago
- A deep learning framework (CreoPep) for target-specific design and optimization of conotoxin peptides☆16Mar 28, 2026Updated 4 months ago
- This repo focuses on supervised and self-supervised bio-sequence representation learning☆22Oct 11, 2023Updated 2 years ago
- 从底层机理了解Transformer☆27Mar 4, 2022Updated 4 years ago
- Protein function prediction using a variational autoencoder☆95Mar 7, 2018Updated 8 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated last year
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆39Aug 7, 2023Updated 3 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- Visualises an ellipsoid in 3d given a mean and covariance matrix from a dataset.☆13Oct 28, 2018Updated 7 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆175Feb 16, 2023Updated 3 years ago