churchlab / Generative_AAV_design
Code and Data for Generative modeling for AAV design
☆10Updated last year
Alternatives and similar repositories for Generative_AAV_design:
Users that are interested in Generative_AAV_design are comparing it to the libraries listed below
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- ☆24Updated last year
- Bioinformatics code for paper associated with deep diversification of AAV☆39Updated 4 months ago
- ☆39Updated 2 weeks ago
- ☆36Updated 3 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆33Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 11 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- ☆19Updated 4 years ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 5 months ago
- A domain parser for Alphafold models☆34Updated last year
- ☆37Updated 6 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆73Updated last year
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆26Updated 5 years ago
- AntiRef: reference clusters of human antibody sequences☆12Updated 11 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated last week
- Neural networks for deep mutational scanning data☆68Updated 5 months ago
- ☆49Updated 2 weeks ago
- Deciphering protein evolution and fitness landscapes with latent space models☆32Updated 3 years ago
- Machine learning-driven antibody design☆54Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆15Updated last year
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year