☆21Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for KapCopenhagen
Users that are interested in KapCopenhagen are comparing it to the libraries listed below
Sorting:
- ☆17Nov 19, 2021Updated 4 years ago
- ☆14Jun 26, 2025Updated 8 months ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated last month
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- ☆22Jun 9, 2021Updated 4 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- ☆12Oct 19, 2023Updated 2 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆19Jan 19, 2026Updated last month
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆78Updated this week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Suite of tools for pangenomics built using vg☆25Jul 18, 2025Updated 7 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- Ancient microbiome snakemake workflow☆27Apr 11, 2025Updated 10 months ago
- ☆18Oct 3, 2025Updated 5 months ago
- mapping pipeline for ancient DNA☆34Feb 20, 2026Updated 2 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 5 months ago
- ☆31Oct 26, 2021Updated 4 years ago
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- This is *NOT* the official repository of samtools.☆49Jun 9, 2017Updated 8 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Workshop 10 - Advanced multivariate analyses☆11Sep 3, 2024Updated last year
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 4 years ago
- ☆11Sep 22, 2025Updated 5 months ago
- ☆12Mar 15, 2025Updated 11 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago