jfy133 / Hominid_Calculus_Microbiome_EvolutionLinks
Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073/pnas.2021655118
☆14Updated 3 years ago
Alternatives and similar repositories for Hominid_Calculus_Microbiome_Evolution
Users that are interested in Hominid_Calculus_Microbiome_Evolution are comparing it to the libraries listed below
Sorting:
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- Speedy versions of phyloseq functions☆47Updated last year
- ☆55Updated last month
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 weeks ago
- Sydney Phylogenetics Workshop☆62Updated this week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆76Updated 3 months ago
- An R package designed for drawing gene arrow maps☆80Updated this week
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆21Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- Genome wide orthology inference and dNdS estimation☆94Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆37Updated last week
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated this week
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- R package for microbial pangenomics☆24Updated 3 years ago
- functions for analyzing phyloseq data☆28Updated 4 months ago
- Working with the outputs of sourmash in R☆27Updated last year
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- gutSMASH☆54Updated 6 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year