Course in population genomics at BiRC
☆12Mar 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for genomic-thinking
Users that are interested in genomic-thinking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- Programs for performing various population genetic analyses☆12Updated this week
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- ☆11Mar 8, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated 2 years ago
- ☆13Dec 3, 2024Updated last year
- ☆11Jun 26, 2020Updated 5 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆26Oct 29, 2020Updated 5 years ago
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated last week
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Oct 7, 2024Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- PyPop: Python for Population Genomics☆25Updated this week
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- mapping pipeline for ancient DNA☆34Feb 20, 2026Updated last month
- 最小二乘法多元线性回归（带房价预测实践）Using the least square method for multielement regression☆10Dec 18, 2018Updated 7 years ago
- Final repository for the project "Unsupervised Machine Learning for the Classification of Astrophysical X-ray Sources". V. S. Pérez-Díaz,…☆10Jan 23, 2024Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Tutorials for statistical genetics short courses☆39Jan 7, 2026Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆24Aug 9, 2023Updated 2 years ago
- ☆12Jul 10, 2022Updated 3 years ago
- Metataxonomics with 16S-23S rRNA operon☆10Apr 28, 2022Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Scripts for gathering SLURM statistics☆23Oct 6, 2018Updated 7 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 4 months ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆27Mar 20, 2026Updated 2 weeks ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ☆57Feb 14, 2022Updated 4 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated last month
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago