Course in population genomics at BiRC
☆12Updated this week
Alternatives and similar repositories for genomic-thinking
Users that are interested in genomic-thinking are comparing it to the libraries listed below
Sorting:
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- Programs for performing various population genetic analyses☆11Dec 2, 2024Updated last year
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- ☆11Jun 26, 2020Updated 5 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Feb 18, 2026Updated last week
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆26Feb 18, 2026Updated last week
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Aug 9, 2023Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Scripts for gathering SLURM statistics☆23Oct 6, 2018Updated 7 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Helper tools for popscle☆21Apr 21, 2023Updated 2 years ago
- mapping pipeline for ancient DNA☆34Feb 20, 2026Updated last week
- PyPop: Python for Population Genomics☆25Updated this week
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- ☆57Feb 14, 2022Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆14Feb 18, 2026Updated last week
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Tutorials for statistical genetics short courses☆37Jan 7, 2026Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- 最小二乘法多元线性回归(带房价预测实践)Using the least square method for multielement regression☆10Dec 18, 2018Updated 7 years ago
- CoMorMent-Containers☆36Updated this week
- ☆36Nov 30, 2023Updated 2 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Final repository for the project "Unsupervised Machine Learning for the Classification of Astrophysical X-ray Sources". V. S. Pérez-Díaz,…☆10Jan 23, 2024Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Code associated with YouTube Statistics tutorials.☆40Jan 25, 2024Updated 2 years ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Dec 4, 2023Updated 2 years ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated this week
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago