Damage parameter estimation for ancient DNA
☆19Aug 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for pydamage
Users that are interested in pydamage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆22Nov 18, 2023Updated 2 years ago
- mapping pipeline for ancient DNA☆35Sep 2, 2026Updated 3 weeks ago
- Ancient microbiome snakemake workflow☆32Jun 12, 2026Updated 3 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆52Jul 14, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- (experimental) Model-intelligent orchestration for CLI bioinformatics☆24Aug 12, 2026Updated last month
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆86Sep 11, 2026Updated last week
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆215Updated this week
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆14Feb 27, 2026Updated 6 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆50Jul 22, 2026Updated 2 months ago
- gargammel is an ancient DNA simulator☆39Aug 18, 2026Updated last month
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- ☆15May 30, 2024Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- ☆16May 26, 2022Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- ☆19Jun 25, 2025Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- TOPAS application for simulating clustered DNA damage☆13Sep 9, 2025Updated last year
- ☆44May 13, 2013Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Aug 26, 2026Updated 3 weeks ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆32May 21, 2022Updated 4 years ago
- ☆15Mar 13, 2026Updated 6 months ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 11 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 3 months ago
- Introduction to Ancient Metagenomics Book☆16Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- ☆19Jun 26, 2025Updated last year
- ☆13Oct 19, 2023Updated 2 years ago
- A classroom exercise using HGDP SNP data to introduce population structure concepts☆14Jul 27, 2021Updated 5 years ago
- Tool for monitoring and anomaly detection of 3D Concrete Printing using Computer Vision☆14Oct 18, 2022Updated 3 years ago
- Course Materials for AAAGs 2018 Workshop☆13Aug 10, 2018Updated 8 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Jan 5, 2025Updated last year