Alternatives and similar repositories for quandenser

Users that are interested in quandenser are comparing it to the libraries listed below

• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 10 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆32Updated 2 months ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆98Updated 3 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated this week
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆82Updated 2 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆50Updated last week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆23Updated 5 months ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆123Updated this week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆60Updated this week
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆58Updated 5 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆90Updated last month
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆31Updated last year
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆20Updated 2 years ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 5 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆12Updated 4 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆88Updated 2 months ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆121Updated 3 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated 2 months ago
• smith-chem-wisc / MetaMorpheus
  Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
  ☆104Updated last week
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆82Updated 3 years ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆50Updated 2 years ago
• mafreitas / tdf2mzml
  ☆30Updated 2 years ago
• gtluu / timsconvert
  ☆44Updated 9 months ago
• mhoopmann / mstoolkit
  Automatically exported from code.google.com/p/mstoolkit
  ☆30Updated 3 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆92Updated 3 weeks ago