Nesvilab / PTM-ShepherdLinks
A tool for summarizing open search results
☆16Updated last month
Alternatives and similar repositories for PTM-Shepherd
Users that are interested in PTM-Shepherd are comparing it to the libraries listed below
Sorting:
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆22Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- Democratizing ML in proteomics☆43Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 3 weeks ago
- Instrument Application Programming Interface☆51Updated this week
- ☆39Updated 6 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆223Updated 2 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated 2 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 6 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated 3 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- ☆26Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 3 weeks ago
- PDV: an integrative proteomics data viewer☆55Updated 2 months ago
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆17Updated 2 years ago
- ☆13Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆102Updated 3 weeks ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- ☆63Updated 6 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆26Updated 9 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆59Updated 3 weeks ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Updated 3 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last year