Alternatives and similar repositories for jsms

Users that are interested in jsms are comparing it to the libraries listed below

• Roestlab / DIAlignR
  This is a R package for alignment of DIA mass-spec data
  ☆12Updated 4 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆36Updated 5 months ago
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated this week
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• eMetaboHUB / MS-CleanR
  ☆26Updated 2 years ago
• HUPO-PSI / mzSpecLib
  mzSpecLib: A standard format to exchange/distribute spectral libraries
  ☆30Updated last month
• HUPO-PSI / mzTab
  mzTab Reporting MS-based Proteomics and Metabolomics Results
  ☆43Updated 8 months ago
• alexandrovteam / curatr
  ☆14Updated 2 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆20Updated last year
• computational-metabolomics / msPurity
  A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆16Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 9 months ago
• computational-metabolomics / msp2db
  Convert MSP files into a database
  ☆10Updated 4 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 3 years ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• bittremieuxlab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆33Updated 2 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆20Updated last year
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆19Updated last year
• secimTools / SECIMTools
  A set of metabolomics tools for use in Galaxy
  ☆11Updated 3 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 3 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 11 months ago
• yeastrc / proxl-web-app
  ProXL Web App -- Visualize and Share Protein Cross-linking Data
  ☆13Updated last month
• WMBEdmands / compMS2Miner
  metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
  ☆16Updated 8 years ago
• bittremieuxlab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆47Updated 7 months ago
• markmipt / ms1searchpy
  ☆12Updated last month
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆53Updated 4 years ago
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆32Updated last week
• lazear / mz_parquet
  ☆15Updated 6 months ago
• msdk / msdk
  MSDK source code repository
  ☆40Updated 3 years ago