ruppinlab / CSI-Microbes-identification
Code for the identification step for CSI-Microbes
☆28Updated 5 months ago
Alternatives and similar repositories for CSI-Microbes-identification:
Users that are interested in CSI-Microbes-identification are comparing it to the libraries listed below
- The code for running the analysis component of CSI-Microbe☆12Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Pan-cancer mycobiome atlas☆25Updated 2 years ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆21Updated 5 years ago
- ☆79Updated last year
- ☆63Updated 10 months ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆13Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆47Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆56Updated 5 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- ☆78Updated 8 months ago
- A R package for advanced single cell data viz☆66Updated last year
- ☆49Updated 9 months ago
- ☆62Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 3 months ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- ☆17Updated 10 months ago
- Pipeline for Cut&Tag analysis☆21Updated 2 weeks ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆29Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆47Updated 3 months ago
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year