ruppinlab / CSI-Microbes-identificationLinks
Code for the identification step for CSI-Microbes
☆31Updated 11 months ago
Alternatives and similar repositories for CSI-Microbes-identification
Users that are interested in CSI-Microbes-identification are comparing it to the libraries listed below
Sorting:
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- ☆51Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆86Updated last year
- ☆32Updated 9 months ago
- GLASS consortium☆42Updated 5 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- ☆47Updated 10 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated last year
- scWGCNA☆61Updated 3 years ago
- ☆22Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago