ruppinlab / CSI-Microbes-identificationLinks
Code for the identification step for CSI-Microbes
☆31Updated 11 months ago
Alternatives and similar repositories for CSI-Microbes-identification
Users that are interested in CSI-Microbes-identification are comparing it to the libraries listed below
Sorting:
- An R package to time somatic mutations☆64Updated 4 years ago
- Bayesian network plot for the enrichment analysis results☆65Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- Tutorial Website☆60Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆51Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- ☆62Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- ☆47Updated 5 years ago
- ☆85Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆54Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆87Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆47Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆18Updated last year
- Repository for Cibersortx☆60Updated 4 years ago
- ☆41Updated 3 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago