ruppinlab / CSI-Microbes-identificationLinks
Code for the identification step for CSI-Microbes
☆31Updated last year
Alternatives and similar repositories for CSI-Microbes-identification
Users that are interested in CSI-Microbes-identification are comparing it to the libraries listed below
Sorting:
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- ☆52Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆48Updated 11 months ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆55Updated 4 years ago
- Pseudotime Analysis for Bulk Data☆18Updated last year
- The code for running the analysis component of CSI-Microbe☆12Updated last year
- ☆89Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- An R package to time somatic mutations☆65Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- ☆47Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- ☆32Updated 11 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Tutorial Website☆60Updated 4 years ago
- ☆25Updated 2 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last year
- Network construction Algorithm☆22Updated last year
- An integrated platform for modeling gene-regulatory dynamics and networks☆33Updated last month
- ☆41Updated 3 years ago