Code for the identification step for CSI-Microbes
☆31Nov 25, 2024Updated last year
Alternatives and similar repositories for CSI-Microbes-identification
Users that are interested in CSI-Microbes-identification are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- ☆95Sep 3, 2024Updated 2 years ago
- supplementary tables and files☆11Oct 13, 2023Updated 3 years ago
- PRecise Identification of Species of the Microbiome☆16Apr 29, 2026Updated 6 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆32Sep 15, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- Pan-cancer mycobiome atlas☆34Oct 7, 2022Updated 4 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆12Feb 14, 2021Updated 5 years ago
- ☆67Aug 14, 2020Updated 6 years ago
- Microbial analysis in TCGA data☆95Feb 23, 2024Updated 2 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆61Oct 26, 2026Updated last week
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- ☆10Sep 2, 2025Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 4 months ago
- ☆11Feb 17, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- ☆54Mar 7, 2023Updated 3 years ago
- Easily Create Interactive Oncoplots☆14Mar 30, 2026Updated 7 months ago
- ☆11Sep 20, 2022Updated 4 years ago
- Join subcellular Visium HD bins into cells☆147Sep 14, 2026Updated last month
- ☆22Sep 20, 2026Updated last month
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆42Jan 30, 2024Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 7 years ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆11Sep 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jun 28, 2020Updated 6 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆204Aug 12, 2025Updated last year
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆42Jan 10, 2026Updated 9 months ago