SamGa3 / microbiome_reconstruction

Related projects ⓘ

Alternatives and complementary repositories for microbiome_reconstruction

• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆27Updated last year
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆14Updated 3 weeks ago
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 3 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆14Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆24Updated 3 years ago
• PaulingLiu / metaICB
  ☆22Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆27Updated last year
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆16Updated 5 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆28Updated 4 months ago
• Asa12138 / MetaNet
  Network analysis for multi-omics
  ☆12Updated 3 months ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated last year
• ventolab / HECA-Human-Endometrial-Cell-Atlas
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆20Updated 4 months ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆35Updated 4 years ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆19Updated last year
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆15Updated 6 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆41Updated 9 months ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆19Updated 5 years ago
• chensujun / scRNA
  ☆29Updated 3 years ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• cit-bioinfo / BLCAsubtyping
  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…
  ☆25Updated last year
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 3 years ago
• pancancer / myeloid
  Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…
  ☆10Updated last year
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• miccec / yaGST
  ☆12Updated 7 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated 10 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆35Updated last week
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆42Updated 3 years ago