SamGa3 / microbiome_reconstruction
☆14Updated last year
Alternatives and similar repositories for microbiome_reconstruction:
Users that are interested in microbiome_reconstruction are comparing it to the libraries listed below
- ☆18Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Calculating Tumor microenvironment score☆28Updated 2 years ago
- ☆17Updated 4 years ago
- ☆13Updated 7 years ago
- An R package for drug response prediction and drug-gene association prediction.☆18Updated 11 months ago
- ☆22Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆12Updated last month
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 2 months ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- ☆16Updated last year
- The source code of web server TIP, including example data.☆19Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆16Updated 4 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago
- ☆16Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆11Updated 11 months ago
- Repository for codes for the HBCA paper☆35Updated 2 years ago
- ☆18Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 9 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- ☆16Updated last year
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28Updated last year
- ☆28Updated 6 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- ☆12Updated 8 months ago
- Visualize the results of cell-cell communication analysis☆20Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆31Updated 9 months ago