PhKoch / RepARKLinks
Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree with the FLI-LICENSE included in the package.
☆16Updated last year
Alternatives and similar repositories for RepARK
Users that are interested in RepARK are comparing it to the libraries listed below
Sorting:
- Contig Ploidy and Allele Dosage Estimation☆10Updated 10 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- AncestralClust☆11Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- FastK based version of Merqury☆28Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- ☆26Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 5 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- chloroplast genome assembly using long reads data☆13Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- use paired-end transcriptome reads to scaffold genomes