PhKoch / RepARKLinks
Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree with the FLI-LICENSE included in the package.
☆16Updated last year
Alternatives and similar repositories for RepARK
Users that are interested in RepARK are comparing it to the libraries listed below
Sorting:
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Reference genome quality scores☆21Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Contig Ploidy and Allele Dosage Estimation☆10Updated 10 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆36Updated 5 months ago
- ☆26Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- AncestralClust☆11Updated 5 months ago
- ULTRA Locates Tandemly Repetitive Areas☆40Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- Ancient microbiome snakemake workflow☆27Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year