VertebrateResequencing / vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
☆31Updated 3 years ago
Alternatives and similar repositories for vr-codebase:
Users that are interested in vr-codebase are comparing it to the libraries listed below
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- Structural Variant Index☆70Updated last month
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- ☆78Updated 10 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- scripts to parse IrysView output☆39Updated 9 years ago
- ☆39Updated 8 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆28Updated 3 years ago
- ☆79Updated 8 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- PHAST☆71Updated last month
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆69Updated 2 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Manipulate FASTA files☆30Updated 10 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago