TomSkelly / MatchAnnot
Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
☆23Updated 9 years ago
Alternatives and similar repositories for MatchAnnot
Users that are interested in MatchAnnot are comparing it to the libraries listed below
Sorting:
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Adapters for trimming☆30Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 11 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- ☆79Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆14Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆32Updated 6 years ago
- processing 10x genomics reads☆25Updated 5 years ago
- ☆35Updated 2 years ago