TomSkelly / MatchAnnotLinks
Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
☆23Updated 10 years ago
Alternatives and similar repositories for MatchAnnot
Users that are interested in MatchAnnot are comparing it to the libraries listed below
Sorting:
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆51Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Structural variant merging tool☆55Updated last year
- Structural variant caller☆55Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- ☆38Updated 2 years ago
- new repo☆28Updated 4 years ago
- ☆26Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- ☆36Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- ☆81Updated 7 months ago
- processing 10x genomics reads☆26Updated 6 years ago
- ☆14Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago