Plant small RNA target prediction tool
☆27Dec 19, 2016Updated 9 years ago
Alternatives and similar repositories for TargetFinder
Users that are interested in TargetFinder are comparing it to the libraries listed below
Sorting:
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets☆21Mar 28, 2021Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- 4C-seq processing pipeline☆26Mar 17, 2025Updated 11 months ago
- QTL analysis in diallel populations☆12Dec 2, 2025Updated 2 months ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆11May 16, 2024Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated 10 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A (very) simple script to QC Hi-C data.☆27Updated this week
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calli…☆13Sep 1, 2023Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 3 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 7 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 7 years ago
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- An integrated package to process diploid Hi-C data☆17Dec 9, 2021Updated 4 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated 10 months ago
- ☆14Jul 27, 2019Updated 6 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- ☆16May 30, 2022Updated 3 years ago
- Convert a Genbank flat file to an NCBI ptt file☆17Aug 25, 2023Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago