carringtonlab / TargetFinderLinks
Plant small RNA target prediction tool
☆26Updated 8 years ago
Alternatives and similar repositories for TargetFinder
Users that are interested in TargetFinder are comparing it to the libraries listed below
Sorting:
- iTAK☆41Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last week
- A pipeline for isoseq☆23Updated 7 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 4 months ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated 4 months ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Upscaling SV detection to a multi-population level.☆22Updated last month
- parallelized blat with multi-threads support☆53Updated 7 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 8 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago