carringtonlab / TargetFinderLinks
Plant small RNA target prediction tool
☆26Updated 9 years ago
Alternatives and similar repositories for TargetFinder
Users that are interested in TargetFinder are comparing it to the libraries listed below
Sorting:
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 8 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 8 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- Evolutionary Transcriptomics with R☆48Updated last month
- ☆14Updated 7 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 7 months ago
- iTAK☆45Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- Updated and optimized fork of BSMAP☆23Updated 5 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- lncRNA-screen☆25Updated 8 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- fastx-utils using klib☆20Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆51Updated 6 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- parallelized blat with multi-threads support☆53Updated 11 months ago
- Adapters for trimming☆30Updated 6 years ago
- ☆30Updated 4 years ago