carringtonlab / TargetFinderLinks
Plant small RNA target prediction tool
☆27Updated 9 years ago
Alternatives and similar repositories for TargetFinder
Users that are interested in TargetFinder are comparing it to the libraries listed below
Sorting:
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 9 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- iTAK☆48Updated last year
- Updated and optimized fork of BSMAP☆23Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 2 weeks ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 8 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Pipeline for Phylostratigraphy☆13Updated 3 years ago
- ☆51Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- Algorithm to detect germline and de novo transposon insertions☆31Updated 5 months ago
- QTL mapping with binmap data☆18Updated 6 years ago
- A (very) simple script to QC Hi-C data.☆26Updated last year