carringtonlab / TargetFinder
Plant small RNA target prediction tool
☆26Updated 8 years ago
Alternatives and similar repositories for TargetFinder:
Users that are interested in TargetFinder are comparing it to the libraries listed below
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last month
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- Evolutionary Transcriptomics with R☆41Updated this week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 7 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 5 years ago
- ☆14Updated 6 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated this week
- web documentation for Trinotate☆48Updated last year
- KOBAS: a command line tool for identifying significant pathways from genomic data☆30Updated 14 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 weeks ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 weeks ago
- ☆21Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 8 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated last month
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆21Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago