parklab / HiNTLinks
HiC for copy Number variation and Translocation detection
☆39Updated 4 years ago
Alternatives and similar repositories for HiNT
Users that are interested in HiNT are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆37Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- Genome-wide contact analysis using sklearn☆70Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 2 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- ☆22Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago
- 4C-seq processing pipeline☆26Updated 7 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- chia pet analysis software☆25Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Tutorial Website☆60Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆24Updated 4 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆35Updated 11 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Docker for 4DN Hi-C processing pipeline☆60Updated 11 months ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Genomic Association Tester☆33Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 4 months ago
- ☆34Updated 11 months ago
- ☆22Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆23Updated 5 years ago