parklab / HiNT
HiC for copy Number variation and Translocation detection
☆35Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for HiNT
- ☆34Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆20Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- Statistically Significant loops from HiChIP data☆39Updated 6 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- ☆19Updated last year
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆58Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- R package to evaluate the reproducibility of Hi-C data☆25Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆35Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- ☆17Updated 5 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ☆10Updated 5 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- IDR☆30Updated last year
- chia pet analysis software☆25Updated 5 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 2 years ago
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- ☆18Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 9 months ago
- Tutorial Website☆53Updated 3 years ago