Functions for single cell data analysis
☆32May 28, 2021Updated 4 years ago
Alternatives and similar repositories for scFunctions
Users that are interested in scFunctions are comparing it to the libraries listed below
Sorting:
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- ☆16Apr 11, 2022Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- GOAT: efficient and robust identification of gene set enrichment☆14Jan 24, 2026Updated last month
- ☆47May 4, 2024Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago
- A single cell transcriptome atlas of the developing zebrafish hindbrain.☆14Jan 2, 2020Updated 6 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- ☆12Mar 5, 2024Updated last year
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Jan 22, 2018Updated 8 years ago
- Cell cycle inference in single-cell RNA-seq☆50Apr 25, 2023Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- ☆11Jun 10, 2024Updated last year
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Jan 3, 2020Updated 6 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- ☆12Sep 20, 2019Updated 6 years ago
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 5 years ago
- ☆57Feb 23, 2024Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Oct 22, 2021Updated 4 years ago
- ☆32May 19, 2019Updated 6 years ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 3 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 4 years ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆18Apr 17, 2025Updated 10 months ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 5 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 8 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Dec 30, 2024Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago