FloWuenne / scFunctionsLinks
Functions for single cell data analysis
☆32Updated 4 years ago
Alternatives and similar repositories for scFunctions
Users that are interested in scFunctions are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Accurate and fast cell marker gene identification with COSG☆46Updated 3 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- ☆50Updated 5 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- Draw phylogenetic trees of tumor evolution☆81Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆57Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆37Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆62Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 3 weeks ago
- ☆41Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆10Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆46Updated 3 years ago