FloWuenne / scFunctionsLinks
Functions for single cell data analysis
☆32Updated 4 years ago
Alternatives and similar repositories for scFunctions
Users that are interested in scFunctions are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆49Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆15Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆22Updated last year
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- ☆30Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- scWGCNA☆60Updated 2 years ago
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- Integration of gut cell atlases☆25Updated 3 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Updated 5 years ago
- ☆61Updated 5 years ago
- Visualize the results of cell-cell communication analysis☆22Updated 2 years ago