A Library for Denoising Single-Cell Data with Random Matrix Theory
☆37Aug 16, 2023Updated 2 years ago
Alternatives and similar repositories for randomly
Users that are interested in randomly are comparing it to the libraries listed below
Sorting:
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 5 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- ☆18Aug 14, 2017Updated 8 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆75Feb 14, 2026Updated 2 weeks ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Images for Saturn Cloud☆12Dec 18, 2025Updated 2 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆32Aug 1, 2024Updated last year
- ☆12Sep 20, 2019Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆17Apr 3, 2025Updated 10 months ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- ☆15Feb 5, 2024Updated 2 years ago
- Python implementation of Bayesian hierarchical clustering and Bayesian rose trees algorithms.☆18Feb 16, 2021Updated 5 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆65Apr 5, 2024Updated last year
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago