Alternatives and similar repositories for CSHMM-for-time-series-scRNA-Seq

Users that are interested in CSHMM-for-time-series-scRNA-Seq are comparing it to the libraries listed below

• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆51Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆55Updated 4 months ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• jaleesr / BITFAM
  BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…
  ☆31Updated 4 months ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated 2 years ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆45Updated 5 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆85Updated last year
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated last month
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 5 months ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆65Updated last month
• lcmmichielsen / scHPL
  ☆37Updated 7 months ago
• lhe17 / nebula
  ☆42Updated 3 months ago
• landau-lab / PATH
  ☆18Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• wenweixiong / MARVEL
  ☆51Updated last year
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• veltenlab / rnamagnet
  ☆25Updated 2 months ago
• hemberg-lab / scfind
  ☆43Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago