kkdey / Logolas
R package for Enrichment Depletion Logos (EDLogos) and String Logos
☆27Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for Logolas
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- ☆28Updated 4 months ago
- ☆22Updated 7 years ago
- Tools for visualizing genomics data☆67Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 3 weeks ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- ☆25Updated 7 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- ☆20Updated 2 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago