bendmorris / taxiphyLinks
Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
☆16Updated 9 years ago
Alternatives and similar repositories for taxiphy
Users that are interested in taxiphy are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Reproducible Phylogenomics☆22Updated 9 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Updated 5 years ago
- Ebola virus surveillance☆15Updated 9 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13Updated 8 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- ☆18Updated 9 years ago
- blast, shmlast☆21Updated 4 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Updated last year
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- taxonomic classes for Python☆11Updated 4 years ago
- IPython notebooks to teach Genomics and Population Genetics☆21Updated 8 years ago
- ☆13Updated 8 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆23Updated 2 years ago
- SVG based genome viewer written in javascript using D3☆33Updated 10 years ago
- Genomics Workshop Overview☆47Updated this week
- My blog.☆16Updated last month
- Abbreviate strings to short, unique identifiers☆24Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago