Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
☆16Nov 30, 2015Updated 10 years ago
Alternatives and similar repositories for taxiphy
Users that are interested in taxiphy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lista de projetos python feitos no Rio de Janeiro☆12Jun 10, 2019Updated 7 years ago
- R/Package Version Check☆23Oct 22, 2021Updated 4 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- useful functions for ggplot☆18Jul 2, 2026Updated 2 months ago
- python port of taxize (taxonomy toolbelt) for R☆38Oct 27, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 4 months ago
- Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…☆92Jan 12, 2021Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated 4 months ago
- python-nexus - Generic nexus (.nex, .trees) reader/writer for python☆12Feb 20, 2025Updated last year
- NCBI taxonomy tree in-memory mapping☆17Oct 20, 2022Updated 3 years ago
- Create and Query a Local Copy of GenBank in R☆28Mar 6, 2025Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated 2 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- EcoSim, an individual-based evolving predator-prey ecosystem simulation☆20Jan 30, 2018Updated 8 years ago
- Collect and disseminate information on fee-based Open Access publishing in Sweden☆11Jun 17, 2026Updated 3 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Generating text completions based on the Mueller report☆29Apr 19, 2019Updated 7 years ago
- ☆14Apr 29, 2024Updated 2 years ago
- ☆15Oct 14, 2020Updated 5 years ago
- Red list assessment tool☆17Mar 20, 2023Updated 3 years ago
- ARCHIVED R Client for the Lagotto Altmetrics Platform☆15May 10, 2022Updated 4 years ago
- fastx-utils using klib☆19Sep 1, 2020Updated 6 years ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆76Dec 17, 2024Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- ☆26Aug 25, 2021Updated 5 years ago
- ARCHIVED Directory of Open Access Journals Client☆11May 10, 2022Updated 4 years ago
- sequence alignment. global, local, glocal.☆42Dec 21, 2016Updated 9 years ago