Collection of notes and scripts related to NGS
☆14Sep 2, 2026Updated 2 months ago
Alternatives and similar repositories for ngs-utils
Users that are interested in ngs-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated last year
- A local database infrastructure for analysis of targeted- and whole genome re-sequencing projects☆11Apr 7, 2015Updated 11 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 3 years ago
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at th…☆10Aug 20, 2026Updated 2 months ago
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Allele frequency filter app☆15May 4, 2022Updated 4 years ago
- ☆16Oct 3, 2017Updated 9 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated last month
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated last year
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Internationalisation of the HPO content☆20Feb 27, 2023Updated 3 years ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated 2 years ago
- use the noise☆14Apr 15, 2020Updated 6 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- do some exercise☆15Dec 2, 2025Updated 11 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- Aligner for sequencing data☆18Apr 20, 2026Updated 6 months ago
- Collection of CGAT NGS Pipelines☆43Nov 8, 2018Updated 7 years ago
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 6 months ago
- Short Tandem Repeat disease loci resource☆30Updated this week
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆17Oct 22, 2026Updated last week