Collection of notes and scripts related to NGS
☆14Feb 18, 2026Updated 3 months ago
Alternatives and similar repositories for ngs-utils
Users that are interested in ngs-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 9 months ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 2 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Oct 3, 2017Updated 8 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 7 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆14May 18, 2026Updated 3 weeks ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- use the noise☆15Apr 15, 2020Updated 6 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- do some exercise☆14Dec 2, 2025Updated 6 months ago
- HTSlib bindings for Ruby☆11May 14, 2026Updated 3 weeks ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- Isaac aligner version 4☆19Apr 20, 2026Updated last month
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- Aligner for sequencing data☆18Apr 20, 2026Updated last month
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Aug 29, 2022Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- Collection of CGAT NGS Pipelines☆43Nov 8, 2018Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Introduction to Python 3☆12Dec 4, 2018Updated 7 years ago
- Accelerated kernel library for genomics☆111Jul 7, 2025Updated 11 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆13Dec 7, 2021Updated 4 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago