Alternatives and similar repositories for DCBLAST

Users that are interested in DCBLAST are comparing it to the libraries listed below

• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• dohalloran / PrimerView
  high-throughput primer design and graphical visualization
  ☆9Updated 7 years ago
• marbl / MUMmer3
  MUMmer3
  ☆17Updated 3 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated last year
• mlangill / MicrobeDB
  Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
  ☆24Updated 10 years ago
• tseemann / kounta
  🧮 🔢 Generate multi-sample k-mer count matrix from WGS
  ☆12Updated 5 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆13Updated 8 years ago
• kakitone / MetaFinisherSC
  This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…
  ☆13Updated 9 years ago
• MadsAlbertsen / miscperlscripts
  Small collection of random useful perl scripts
  ☆21Updated 10 years ago
• VGP / vgp-tools
  ☆28Updated last month
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 4 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• brwnj / fastq-join
  Squared distance for anchored alignment joiner of ea-utils.
  ☆9Updated 7 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆16Updated 11 months ago
• lh3 / treebest
  TreeBeST: Tree Building guided by Species Tree
  ☆14Updated 14 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 6 months ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year