wyim-pgl / DCBLASTLinks
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
☆11Updated 5 years ago
Alternatives and similar repositories for DCBLAST
Users that are interested in DCBLAST are comparing it to the libraries listed below
Sorting:
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- MUMmer3☆17Updated 4 years ago
- Scripts and documentations on the MCSC decontamination method☆10Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Updated 8 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.☆69Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Code for nanopore paper☆33Updated 10 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Updated last week
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 8 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Bacterial taxonomy construction and evaluation in R☆15Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- ☆15Updated 7 years ago
- ☆30Updated 2 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 7 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 8 months ago