Bioconductor / copy-number-analysis
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
☆21Updated 2 years ago
Alternatives and similar repositories for copy-number-analysis:
Users that are interested in copy-number-analysis are comparing it to the libraries listed below
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 9 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆13Updated 7 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- ☆38Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- ☆16Updated 6 years ago
- ☆30Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- RNA editing tests☆17Updated 4 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- ☆43Updated 6 years ago
- Tutorial Website☆57Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago