Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
☆21Mar 15, 2023Updated 3 years ago
Alternatives and similar repositories for copy-number-analysis
Users that are interested in copy-number-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆47Sep 20, 2022Updated 3 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- ☆12Oct 19, 2021Updated 4 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for inferring copy number from read depth☆33Sep 30, 2022Updated 3 years ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆46Jan 26, 2022Updated 4 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆12Jul 22, 2026Updated 2 weeks ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 9 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆16Aug 20, 2021Updated 4 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- ☆27Aug 8, 2024Updated 2 years ago
- Simple tools for analyze memory usage of Linux processes☆18Nov 7, 2021Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Framework for efficient high-dimensional association analyses.☆19Feb 11, 2026Updated 5 months ago
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 11 years ago