Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
☆21Mar 15, 2023Updated 2 years ago
Alternatives and similar repositories for copy-number-analysis
Users that are interested in copy-number-analysis are comparing it to the libraries listed below
Sorting:
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 12 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆18Sep 8, 2015Updated 10 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- ☆15Jun 2, 2021Updated 4 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Sep 20, 2022Updated 3 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Jan 18, 2016Updated 10 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- Primer3Plus is an advanced web interface for primer3.☆44Apr 26, 2025Updated 10 months ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago
- QDNAseq package for Bioconductor☆54Jul 27, 2024Updated last year
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 2 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Dec 21, 2022Updated 3 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- ☆26Aug 8, 2024Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Feb 17, 2022Updated 4 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 2 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Dec 19, 2019Updated 6 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Feb 11, 2026Updated 2 weeks ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 2 years ago
- VarDict☆201Jan 5, 2024Updated 2 years ago
- R package for inferring copy number from read depth☆32Sep 30, 2022Updated 3 years ago