Bioconductor / copy-number-analysis
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
☆21Updated 2 years ago
Alternatives and similar repositories for copy-number-analysis:
Users that are interested in copy-number-analysis are comparing it to the libraries listed below
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆13Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 9 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆16Updated 6 years ago
- ☆38Updated 5 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 3 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- ☆30Updated 6 years ago