Bioconductor / copy-number-analysisLinks
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
☆20Updated 2 years ago
Alternatives and similar repositories for copy-number-analysis
Users that are interested in copy-number-analysis are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆13Updated 7 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆17Updated 6 years ago
- ☆38Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆9Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ☆34Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago