shenlab-sinai / GeneOverlap
R package for testing and visualizing gene list overlaps
☆18Updated 8 years ago
Alternatives and similar repositories for GeneOverlap:
Users that are interested in GeneOverlap are comparing it to the libraries listed below
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- ☆20Updated 10 months ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- ☆11Updated 10 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last week
- QTL Discovery using Annotations☆24Updated 2 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- ☆15Updated 2 years ago
- Pan-transcriptomic phenotyping☆17Updated last week
- ☆38Updated 2 years ago
- ☆28Updated 9 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- ☆27Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Motif manipulation functions for R.☆28Updated 2 weeks ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 4 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 10 months ago
- Identify cell types and pathways affected by genetic risk loci.☆37Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- ☆46Updated 6 months ago
- workshop website on readthedocs☆19Updated last week
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆16Updated 11 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago