marvin-jens / find_circ
tools to find circRNAs in RNA-seq data
☆40Updated 7 years ago
Alternatives and similar repositories for find_circ:
Users that are interested in find_circ are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Tutorial Website☆55Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- ☆30Updated 6 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- ☆13Updated 7 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 4 months ago
- ☆40Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Tools for analyzing DNA methylation data☆36Updated last month
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated this week
- My own tools code for NGS data analysis (Next Generation Sequencing)☆29Updated 5 years ago
- STARRPeaker: STARR-seq peak caller☆15Updated 2 years ago