marvin-jens / find_circ
tools to find circRNAs in RNA-seq data
☆42Updated 7 years ago
Alternatives and similar repositories for find_circ:
Users that are interested in find_circ are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Tutorial Website☆59Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- ☆43Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆30Updated 6 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A computational workflow for exitron splicing identification☆12Updated 8 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 3 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- ☆58Updated 3 years ago
- ☆13Updated 7 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- Demultiplexes a fastq.☆44Updated 4 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- ☆50Updated 6 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago