Alternatives and similar repositories for pipeline

Users that are interested in pipeline are comparing it to the libraries listed below

• pcingola / SnpSift
  ☆38Updated 8 months ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆60Updated 2 years ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆46Updated 2 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated this week
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• JoseBlanca / seq_crumbs
  Little sequence file utilities meant to work within Unix pipelines
  ☆37Updated 10 years ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆57Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• JohnUrban / poreminion
  Additional tools for analyzing Oxford Nanopore minION data
  ☆17Updated 10 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆70Updated 4 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 3 years ago
• statgen / fastQValidator
  Validate FastQ Files
  ☆36Updated 7 years ago
• hallamlab / metapathways2
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Updated 9 years ago
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 9 months ago
• griffithlab / rnaseq_tutorial_wiki
  The wiki repo, with pull request enabled, for the rnaseq_tutorial
  ☆26Updated 5 years ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆95Updated 7 years ago