The MG-RAST pipeline
☆25Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 4 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- Python CLI for alignment-free genomics.☆12Feb 11, 2026Updated 2 weeks ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jan 20, 2026Updated last month
- Annotation of in source LC/MS data☆12Oct 19, 2024Updated last year
- ☆17Apr 19, 2021Updated 4 years ago
- GraphQL search API service☆13Updated this week
- OPAL: Open-community Profiling Assessment tooL☆30Jan 6, 2026Updated last month
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- numpy based SOM Library☆10Sep 5, 2016Updated 9 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated last month
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 8 years ago
- workflow and resource management system for bioinformatics data analysis☆70Oct 29, 2020Updated 5 years ago
- For anyone who wants to share and compare their microbiome data.☆29Jun 17, 2016Updated 9 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 12 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 8 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- Little Book of R for Multivariate Analysis☆25Apr 29, 2016Updated 9 years ago
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated last year
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- ☆21Jul 12, 2016Updated 9 years ago
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆20Apr 5, 2017Updated 8 years ago
- For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.☆66Aug 15, 2016Updated 9 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- Little sequence file utilities meant to work within Unix pipelines☆37Jan 20, 2015Updated 11 years ago
- YAML based adage☆24Sep 4, 2025Updated 5 months ago
- Metabolome Annotation Workflow☆26Oct 31, 2025Updated 3 months ago
- High-level implementation of the ClockworkRNN☆19Aug 17, 2019Updated 6 years ago