MG-RAST / pipelineLinks
The MG-RAST pipeline
☆23Updated 2 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- The MG-RAST Backend -- the API server☆45Updated 2 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆67Updated 3 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- ☆63Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Ensembl tools☆35Updated 5 months ago
- ☆83Updated 3 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Validate FastQ Files☆36Updated 6 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated 4 months ago
- ☆38Updated 8 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆36Updated 6 months ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- ☆63Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago