robsyme / nextflow-annotate
Workflows I find helpful for fungal genome annotation
☆20Updated last year
Alternatives and similar repositories for nextflow-annotate:
Users that are interested in nextflow-annotate are comparing it to the libraries listed below
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Find Unique genomic Regions☆29Updated last month
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆31Updated last year
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- ☆35Updated 4 years ago
- Just Annotate My Genome☆18Updated 4 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Code for nanopore paper☆33Updated 9 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆17Updated 2 years ago