Workflows I find helpful for fungal genome annotation
☆22Jun 30, 2023Updated 3 years ago
Alternatives and similar repositories for nextflow-annotate
Users that are interested in nextflow-annotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 4 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Apr 14, 2019Updated 7 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 7 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- An ultra light YAML-based pipeline execution engine☆20Aug 30, 2017Updated 9 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated 2 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- Nextflow Workshop at Rocky Mountain Genomics HackCon 2018☆10Jun 19, 2018Updated 8 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Aug 31, 2026Updated 3 weeks ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Pull meta information from scholarly articles☆24Feb 16, 2019Updated 7 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Feb 28, 2018Updated 8 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆25Dec 1, 2022Updated 3 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆30Jul 1, 2026Updated 2 months ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆17Jun 22, 2026Updated 3 months ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- ☆28Jul 18, 2026Updated 2 months ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- Genotype Imputation Pipeline for H3Africa☆26Nov 5, 2024Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 10 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated last year
- Example of SGTK application for E.coli dataset:☆32Jul 13, 2020Updated 6 years ago