ponnhide / PySangerLinks
A Python module to analyze Sanger sequencing results.
☆24Updated last year
Alternatives and similar repositories for PySanger
Users that are interested in PySanger are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated 3 weeks ago
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆37Updated last year
- Fast and flexible ORF finder☆76Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆31Updated 7 years ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23Updated 4 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆38Updated 2 years ago
- gatk4 RNA variant calling pipeline☆54Updated 2 weeks ago
- Analysis pipeline for the GUIDE-seq assay.☆27Updated 2 months ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated 2 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated last year
- Merging paired-end reads and removing adapters☆46Updated last week
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆79Updated 2 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 7 months ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆23Updated 2 months ago
- Pair-End AssembeR☆32Updated 11 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Nanopore Plasmid Sequencing☆33Updated 2 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Making bioinformatics fun again☆74Updated 4 months ago
- A genome browser in your Jupyter notebook☆31Updated 4 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- What should perfect bioinformatic tools be like?☆134Updated 2 weeks ago