ponnhide / PySangerLinks
A Python module to analyze Sanger sequencing results.
☆24Updated last year
Alternatives and similar repositories for PySanger
Users that are interested in PySanger are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆38Updated last year
- Fast and flexible ORF finder☆76Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 2 months ago
- Making bioinformatics fun again☆74Updated 2 weeks ago
- 🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing dat…☆23Updated 5 months ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆31Updated 7 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆79Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 8 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated 2 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- visual analysis of your VCF files☆38Updated 2 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated 2 years ago
- gatk4 RNA variant calling pipeline☆55Updated this week
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Merging paired-end reads and removing adapters☆46Updated last month
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆94Updated 3 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Analysis pipeline for the GUIDE-seq assay.☆28Updated 2 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago