lilab-bioinfo / xQTLbiolinks
xQTLbiolinks: an R package for integrative analysis with xQTL data
☆16Updated 11 months ago
Alternatives and similar repositories for xQTLbiolinks:
Users that are interested in xQTLbiolinks are comparing it to the libraries listed below
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated 7 months ago
- ☆21Updated 3 months ago
- FLAMES: Accurate gene prioritization in GWAS loci☆32Updated last month
- Tissue-Gene Fine-Mapping☆16Updated last month
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last year
- ☆19Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆23Updated this week
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- An R package for creating ggplot2 based miami plots.☆16Updated last month
- Regional association plots☆25Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆32Updated 2 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- Quality control steps for GWAS☆21Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆29Updated 3 weeks ago
- GWAS genetics Fine-mapping method☆23Updated 6 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- ☆21Updated 3 weeks ago
- This is a pipeline for calculating weights for TWAS☆31Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 5 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆14Updated 4 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆15Updated last week
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- Cross-population fine-mapping☆34Updated 4 months ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 2 years ago
- TWAS-pipeline☆22Updated 4 years ago
- Create Regional Association Plots☆11Updated 8 months ago
- ☆46Updated 5 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- A collection of commonly used resources for complex trait genetics.☆27Updated 2 months ago
- SCALLOP-INF analysis☆20Updated 7 months ago