lilab-bioinfo / xQTLbiolinksLinks
xQTLbiolinks: an R package for integrative analysis with xQTL data
☆17Updated last year
Alternatives and similar repositories for xQTLbiolinks
Users that are interested in xQTLbiolinks are comparing it to the libraries listed below
Sorting:
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆37Updated 11 months ago
- Tissue-Gene Fine-Mapping☆21Updated 5 months ago
- ☆23Updated last month
- FLAMES: Accurate gene prioritization in GWAS loci☆43Updated 6 months ago
- ☆15Updated 3 weeks ago
- Create Regional Association Plots☆12Updated last week
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆12Updated 2 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- An R package for creating ggplot2 based miami plots.☆17Updated 6 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 2 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- ☆19Updated last month
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆29Updated 2 weeks ago
- Quality control steps for GWAS☆24Updated 2 years ago
- A collection of commonly used resources for complex trait genetics.☆33Updated 2 months ago
- ☆22Updated 5 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Cross-population fine-mapping☆37Updated 9 months ago
- ☆10Updated 4 months ago
- ☆12Updated last year
- SCALLOP-INF analysis☆20Updated last year
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆40Updated 2 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 7 months ago
- GWAS genetics Fine-mapping method☆25Updated 11 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 5 months ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆17Updated 3 months ago