lilab-bioinfo / xQTLbiolinksView external linksLinks
xQTLbiolinks: an R package for integrative analysis with xQTL data
☆17Jan 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for xQTLbiolinks
Users that are interested in xQTLbiolinks are comparing it to the libraries listed below
Sorting:
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆39Feb 8, 2025Updated last year
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 2 months ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆14Mar 15, 2023Updated 2 years ago
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Feb 4, 2021Updated 5 years ago
- ☆17May 15, 2025Updated 9 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 9 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated 10 months ago
- Development for SAIGE and SAIGE-GENE(+)☆89Updated this week
- Connecting GWAS summary data to analytical tools☆23Mar 25, 2024Updated last year
- Calculates allelic Fold Change (aFC) using standard input files for fastQTL.☆26Jun 30, 2022Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Apr 21, 2025Updated 9 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆87May 13, 2022Updated 3 years ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- Mendelian Randomization Bayesian Model Averaging☆22Feb 21, 2023Updated 2 years ago
- ☆24Jan 8, 2026Updated last month
- GWAS Summary Statistics Data Harmonisation☆25Jan 7, 2026Updated last month
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Feb 8, 2026Updated last week
- ☆27Aug 20, 2020Updated 5 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆65Dec 13, 2024Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- R package for epigraphdb☆28Jul 6, 2024Updated last year
- ☆26Jul 28, 2025Updated 6 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Tutorial for running Mendelian Randomization analysis using R☆35Apr 29, 2024Updated last year
- A collection of various utilities for GWAS summary statistics☆32May 14, 2024Updated last year
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Jun 18, 2023Updated 2 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Jan 28, 2026Updated 2 weeks ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- My configuration files on macOS☆11Jan 27, 2026Updated 2 weeks ago