fusiontranscripts / FusionBenchmarkingLinks
Toolkit for benchmarking fusion transcript predictions
☆19Updated 10 months ago
Alternatives and similar repositories for FusionBenchmarking
Users that are interested in FusionBenchmarking are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- ☆33Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 9 months ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- ☆15Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- ☆36Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago