fusiontranscripts / FusionBenchmarking
Toolkit for benchmarking fusion transcript predictions
☆18Updated 7 months ago
Alternatives and similar repositories for FusionBenchmarking:
Users that are interested in FusionBenchmarking are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- ☆15Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆34Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 5 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 weeks ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated this week
- iread☆24Updated 3 years ago
- Explore the cancer relevance of your gene list☆50Updated 3 weeks ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- DriverPower☆26Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 months ago
- a R package to identify neoantigens from NGS data☆19Updated 7 years ago