scikit-bio / scikit-bio-tutorialsLinks
Interactive tutorials for using scikit-bio in biological research
☆28Updated 2 months ago
Alternatives and similar repositories for scikit-bio-tutorials
Users that are interested in scikit-bio-tutorials are comparing it to the libraries listed below
Sorting:
- ☆75Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 7 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 2 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 6 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆21Updated 3 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- ☆25Updated 4 years ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 11 months ago
- Making bioinformatics fun again☆74Updated 2 weeks ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆19Updated 7 years ago
- ClinVar Mapping and Annotation Toolkit☆20Updated 2 weeks ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Deep representation learning for disease prediction based on microbiome data☆62Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated 2 years ago
- ☆37Updated 2 years ago
- ☆27Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Associated code for EvoWeaver publication☆15Updated 5 months ago
- ☆11Updated 6 years ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆55Updated 3 years ago