Alternatives and similar repositories for ntEmbd:

Users that are interested in ntEmbd are comparing it to the libraries listed below

• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 5 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated 2 years ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆17Updated 6 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 2 weeks ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆24Updated 11 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆36Updated this week
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated last month
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• IOB-Muenster / nanopipe2
  The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…
  ☆18Updated 6 years ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆20Updated 11 months ago
• welch-lab / SquiggleNet
  ☆20Updated 2 years ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆16Updated 3 weeks ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 10 months ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated 2 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆50Updated last month
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 6 months ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated last month
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆35Updated 7 months ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated last month
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 3 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆33Updated 8 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆47Updated 2 months ago