Deep learning embedding for nucleotide sequences
☆20Mar 26, 2025Updated 11 months ago
Alternatives and similar repositories for ntEmbd
Users that are interested in ntEmbd are comparing it to the libraries listed below
Sorting:
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- ☆13Feb 20, 2024Updated 2 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆77Dec 13, 2023Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Interactive tutorials for using scikit-bio in biological research☆65Feb 20, 2026Updated last week
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 8 months ago
- ☆15May 29, 2024Updated last year
- Construct a Physical Map from Linked Reads☆18Apr 5, 2024Updated last year
- Multistrand nucleic acid kinetic simulator☆20Oct 28, 2025Updated 4 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Components of genome sequence assembly tools☆21Mar 30, 2022Updated 3 years ago
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆26Aug 11, 2024Updated last year
- A Biostatistical tool for Transcriptomics Analysis☆22Feb 19, 2022Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆53Jan 12, 2026Updated last month
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆24Nov 28, 2025Updated 3 months ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆57Oct 11, 2022Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- 📚Bioinformatics Technology Lab common code library☆28Feb 3, 2026Updated 3 weeks ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆10Jan 26, 2026Updated last month
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- Genomic sequence aligner☆33Oct 21, 2025Updated 4 months ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated last year
- ☆10May 22, 2024Updated last year
- Convert vcf in parquet☆29Jan 23, 2025Updated last year
- Protein structure alignment and search algorithm☆80Updated this week
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Jan 2, 2024Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated last month