Alternatives and similar repositories for ntEmbd

Users that are interested in ntEmbd are comparing it to the libraries listed below

• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 3 weeks ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• gagneurlab / SpeciesLM
  Species-aware DNA language models capture regulatory elements and their evolution
  ☆26Updated 2 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 weeks ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆19Updated 7 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆49Updated 2 weeks ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated this week
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 10 months ago
• debbiemarkslab / popEVE
  ☆38Updated 3 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last week
• althonos / pymemesuite
  Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
  ☆16Updated 6 months ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆16Updated 6 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 6 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆34Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• GSLBiotech / clustal-omega
  Multiple sequence aligner for protein and DNA/RNA.
  ☆20Updated 7 years ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated last month
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆62Updated 5 years ago
• welch-lab / SquiggleNet
  ☆21Updated last month
• crisprVerse / crisprScore
  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
  ☆23Updated 2 weeks ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆57Updated 9 months ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆15Updated 3 years ago
• sanderlab / AlignmentViewer2.0
  ☆24Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆37Updated last year
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆13Updated 2 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated this week
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆15Updated 4 years ago
• Illumina / PrimateAI-3D
  ☆71Updated 3 weeks ago