bcgsc / ntEmbdLinks
Deep learning embedding for nucleotide sequences
☆18Updated 2 months ago
Alternatives and similar repositories for ntEmbd
Users that are interested in ntEmbd are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 5 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- A genome browser in your Jupyter notebook☆31Updated 3 weeks ago
- Protein Sequence Annotation with Language Models☆20Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆20Updated 2 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- ☆22Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Associated code for EvoWeaver publication☆13Updated 2 weeks ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆59Updated 4 years ago
- ☆33Updated last month
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 4 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 9 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Nanopore Plasmid Sequencing☆32Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆13Updated this week
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆31Updated 2 years ago
- The tRNA adaptation index☆18Updated last month
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆58Updated 2 weeks ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago